J4_9NLS_011

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9NLS|1|R3|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9NLS_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2547

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9NLS|1|R3|G|115
9NLS|1|R3|A|116
9NLS|1|R3|G|117
9NLS|1|R3|U|118
9NLS|1|R3|A|119
9NLS|1|R3|A|120
9NLS|1|R3|U|121
9NLS|1|R3|G|122
*
9NLS|1|R3|U|239
9NLS|1|R3|G|240
*
9NLS|1|R3|C|286
9NLS|1|R3|U|287
9NLS|1|R3|A|288
9NLS|1|R3|G|289
*
9NLS|1|R3|C|311
9NLS|1|R3|C|312

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sp

Small ribosomal subunit protein bS16

Chain sq

Small ribosomal subunit protein uS17