J4_9NO7_009

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

9NO7|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NO7|1|A|C|2285
9NO7|1|A|A|2286
9NO7|1|A|A|2287
9NO7|1|A|A|2288
9NO7|1|A|G|2289
*
9NO7|1|A|C|2343
9NO7|1|A|U|2344
9NO7|1|A|G|2345
9NO7|1|A|A|2346
9NO7|1|A|C|2347
*
9NO7|1|A|G|2370
9NO7|1|A|G|2371
9NO7|1|A|G|2372
*
9NO7|1|A|C|2381
9NO7|1|A|G|2382
9NO7|1|A|G|2383

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain 6

50S ribosomal protein L33

Chain 8

50S ribosomal protein L35

Chain S

50S ribosomal protein L18