J4_9NO7_012

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

9NO7|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NO7|1|a|G|142
9NO7|1|a|A|143
9NO7|1|a|G|144
*
9NO7|1|a|C|178
9NO7|1|a|A|179
9NO7|1|a|U|180
9NO7|1|a|G|181
9NO7|1|a|U|182
9NO7|1|a|G|183
*
9NO7|1|a|C|194
9NO7|1|a|A|195
9NO7|1|a|A|196
9NO7|1|a|A|197
9NO7|1|a|G|198
*
9NO7|1|a|C|219
9NO7|1|a|G|220
9NO7|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20