J4_9O2X_006

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9O2X|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O2X|1|a|C|268
9O2X|1|a|C|269
*
9O2X|1|a|G|370
9O2X|1|a|A|371
9O2X|1|a|G|372
9O2X|1|a|U|373
9O2X|1|a|A|374
9O2X|1|a|G|375
*
9O2X|1|a|U|399
9O2X|1|a|G|400
9O2X|1|a|A|401
9O2X|1|a|A|402
9O2X|1|a|U|403
9O2X|1|a|A|404
9O2X|1|a|U|405
9O2X|1|a|G|406
*
9O2X|1|a|C|421
9O2X|1|a|A|422
9O2X|1|a|A|423
9O2X|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28