J4_9O2Y_001

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9O2Y|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O2Y|1|A|G|115
9O2Y|1|A|A|116
9O2Y|1|A|G|117
9O2Y|1|A|U|118
9O2Y|1|A|A|119
9O2Y|1|A|A|120
9O2Y|1|A|U|121
9O2Y|1|A|G|122
*
9O2Y|1|A|U|239
9O2Y|1|A|G|240
*
9O2Y|1|A|C|286
9O2Y|1|A|U|287
9O2Y|1|A|A|288
9O2Y|1|A|G|289
*
9O2Y|1|A|C|311
9O2Y|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17