J4_9O2Y_008

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9O2Y|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O2Y|1|a|C|601
9O2Y|1|a|A|602
9O2Y|1|a|A|603
9O2Y|1|a|G|604
*
9O2Y|1|a|C|624
9O2Y|1|a|G|625
9O2Y|1|a|A|626
9O2Y|1|a|A|627
9O2Y|1|a|G|628
*
9O2Y|1|a|C|635
9O2Y|1|a|G|636
9O2Y|1|a|A|637
9O2Y|1|a|G|638
*
9O2Y|1|a|C|650
9O2Y|1|a|G|651
9O2Y|1|a|U|652
9O2Y|1|a|U|653
9O2Y|1|a|A|654
9O2Y|1|a|A|655
9O2Y|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15