J4_9O2Y_011
3D structure
- PDB id
- 9O2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.14 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9O2Y|1|a|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9O2Y_011 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.2431
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9O2Y|1|a|U|1313
9O2Y|1|a|C|1314
*
9O2Y|1|a|G|1338
9O2Y|1|a|G|1339
9O2Y|1|a|U|1340
9O2Y|1|a|G|1341
9O2Y|1|a|A|1342
9O2Y|1|a|G|1343
*
9O2Y|1|a|C|1404
9O2Y|1|a|U|1405
*
9O2Y|1|a|A|1597
9O2Y|1|a|A|1598
9O2Y|1|a|U|1599
9O2Y|1|a|C|1600
9O2Y|1|a|G|1601
9O2Y|1|a|U|1602
9O2Y|1|a|A|1603
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
Coloring options: