J4_9O3W_004

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9O3W|1|L5|A|2366, 9O3W|1|L5|U|2369, 9O3W|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|OMC|2365
9O3W|1|L5|A|2366
9O3W|1|L5|A|2367
9O3W|1|L5|A|2368
9O3W|1|L5|U|2369
9O3W|1|L5|A|2370
9O3W|1|L5|U|2371
*
9O3W|1|L5|A|2389
9O3W|1|L5|G|2390
9O3W|1|L5|G|2391
*
9O3W|1|L5|OMC|2824
9O3W|1|L5|A|2825
9O3W|1|L5|U|2826
9O3W|1|L5|G|2827
9O3W|1|L5|U|2828
9O3W|1|L5|U|2829
*
9O3W|1|L5|A|3856
9O3W|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31