J4_9O3W_012

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUAAG*UUGA(PSU)*ACC*GGG

Length

16 nucleotides

Bulged bases

9O3W|1|L5|A|4234

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|C|4231
9O3W|1|L5|U|4232
9O3W|1|L5|A|4233
9O3W|1|L5|A|4234
9O3W|1|L5|G|4235
*
9O3W|1|L5|U|4289
9O3W|1|L5|U|4290
9O3W|1|L5|G|4291
9O3W|1|L5|A|4292
9O3W|1|L5|PSU|4293
*
9O3W|1|L5|A|4317
9O3W|1|L5|C|4318
9O3W|1|L5|C|4319
*
9O3W|1|L5|G|4328
9O3W|1|L5|G|4329
9O3W|1|L5|G|4330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

Large ribosomal subunit protein eL42