J4_9O3W_013

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

9O3W|1|L5|U|4677

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|4587
9O3W|1|L5|U|4588
9O3W|1|L5|A|4589
9O3W|1|L5|A2M|4590
*
9O3W|1|L5|OMU|4620
9O3W|1|L5|C|4621
*
9O3W|1|L5|G|4676
9O3W|1|L5|U|4677
9O3W|1|L5|G|4678
*
9O3W|1|L5|C|4712
9O3W|1|L5|G|4713
9O3W|1|L5|C|4714
9O3W|1|L5|C|4715

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13

Chain LV

Large ribosomal subunit protein uL14