J4_9OFV_007

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9OFV|1|f|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OFV|1|f|C|2192
9OFV|1|f|U|2193
9OFV|1|f|G|2194
*
9OFV|1|f|C|2248
9OFV|1|f|G|2249
*
9OFV|1|f|C|2267
9OFV|1|f|U|2268
9OFV|1|f|U|2269
9OFV|1|f|A|2270
9OFV|1|f|A|2271
9OFV|1|f|G|2272
9OFV|1|f|G|2273
9OFV|1|f|U|2274
9OFV|1|f|A|2275
9OFV|1|f|G|2276
*
9OFV|1|f|U|2310
9OFV|1|f|G|2311
9OFV|1|f|A|2312
9OFV|1|f|A|2313
9OFV|1|f|U|2314
9OFV|1|f|G|2315

Current chains

Chain f

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L2-A