J4_9OGY_002

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

9OGY|1|2|A|672, 9OGY|1|2|A|1083, 9OGY|1|2|C|1085, 9OGY|1|2|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|A|671
9OGY|1|2|A|672
9OGY|1|2|G|673
*
9OGY|1|2|C|1032
9OGY|1|2|G|1033
9OGY|1|2|A|1034
9OGY|1|2|A|1035
9OGY|1|2|A|1036
9OGY|1|2|G|1037
*
9OGY|1|2|C|1078
9OGY|1|2|C|1079
9OGY|1|2|A|1080
9OGY|1|2|U|1081
9OGY|1|2|A|1082
9OGY|1|2|A|1083
9OGY|1|2|A|1084
9OGY|1|2|C|1085
9OGY|1|2|G|1086
9OGY|1|2|A|1087
9OGY|1|2|U|1088
9OGY|1|2|G|1089
*
9OGY|1|2|U|1160
9OGY|1|2|U|1161

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Ribosomal protein S11

Chain O

Ribosomal protein S13

Chain P

Ribosomal protein S14

Chain X

Ribosomal protein S15a

Chain Y

uS12

Chain b

eS26

Chain n

eL41