J4_9P73_014
3D structure
- PDB id
- 9P73 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF2-A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9P73|1|PE|U|8, 9P73|1|PE|U|47, 9P73|1|PE|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9P73_014 not in the Motif Atlas
- Homologous match to J4_7U2J_014
- Geometric discrepancy: 0.2747
- The information below is about J4_7U2J_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9P73|1|PE|A|7
9P73|1|PE|U|8
9P73|1|PE|A|9
9P73|1|PE|G|10
*
9P73|1|PE|C|25
9P73|1|PE|A|26
9P73|1|PE|U|27
*
9P73|1|PE|A|43
9P73|1|PE|G|44
9P73|1|PE|G|45
9P73|1|PE|G|46
9P73|1|PE|U|47
9P73|1|PE|C|48
9P73|1|PE|C|49
*
9P73|1|PE|G|65
9P73|1|PE|U|66
Current chains
- Chain PE
- P/E site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lo
- 60S ribosomal protein L36a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: