J4_9P79_009

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9P79|1|L5|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|C|3696
9P79|1|L5|U|3697
9P79|1|L5|G|3698
*
9P79|1|L5|C|3752
9P79|1|L5|G|3753
*
9P79|1|L5|C|3771
9P79|1|L5|U|3772
9P79|1|L5|U|3773
9P79|1|L5|A|3774
9P79|1|L5|A|3775
9P79|1|L5|G|3776
9P79|1|L5|G|3777
9P79|1|L5|U|3778
9P79|1|L5|A|3779
9P79|1|L5|G|3780
*
9P79|1|L5|U|3814
9P79|1|L5|G|3815
9P79|1|L5|A|3816
9P79|1|L5|A|3817
9P79|1|L5|UY1|3818
9P79|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA