J4_9P7I_016

3D structure

PDB id

9P7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

A(PSU)CUUGGGAGCGGGCGUCCCCGCCCU*AGCG(OMU)U*A(PSU)(OMG)GAAUAGG*CAUGAU

Length

48 nucleotides

Bulged bases

9P7I|1|S2|C|687, 9P7I|1|S2|G|697, 9P7I|1|S2|G|698, 9P7I|1|S2|U|732, 9P7I|1|S2|C|733, 9P7I|1|S2|C|735, 9P7I|1|S2|U|871, 9P7I|1|S2|G|873, 9P7I|1|S2|A|913

QA status

Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7I|1|S2|A|685
9P7I|1|S2|PSU|686
9P7I|1|S2|C|687
9P7I|1|S2|U|688
9P7I|1|S2|U|689
9P7I|1|S2|G|690
9P7I|1|S2|G|691
9P7I|1|S2|G|692
9P7I|1|S2|A|693
9P7I|1|S2|G|694
9P7I|1|S2|C|695
9P7I|1|S2|G|696
9P7I|1|S2|G|697
9P7I|1|S2|G|698
9P7I|1|S2|C|730
9P7I|1|S2|G|731
9P7I|1|S2|U|732
9P7I|1|S2|C|733
9P7I|1|S2|C|734
9P7I|1|S2|C|735
9P7I|1|S2|C|736
9P7I|1|S2|G|737
9P7I|1|S2|C|738
9P7I|1|S2|C|739
9P7I|1|S2|C|746
9P7I|1|S2|U|747
*
9P7I|1|S2|A|795
9P7I|1|S2|G|796
9P7I|1|S2|C|797
9P7I|1|S2|G|798
9P7I|1|S2|OMU|799
9P7I|1|S2|U|800
*
9P7I|1|S2|A|865
9P7I|1|S2|PSU|866
9P7I|1|S2|OMG|867
9P7I|1|S2|G|868
9P7I|1|S2|A|869
9P7I|1|S2|A|870
9P7I|1|S2|U|871
9P7I|1|S2|A|872
9P7I|1|S2|G|873
9P7I|1|S2|G|874
*
9P7I|1|S2|C|912
9P7I|1|S2|A|913
9P7I|1|S2|U|914
9P7I|1|S2|G|915
9P7I|1|S2|A|916
9P7I|1|S2|U|917

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SH

Small ribosomal subunit protein eS7

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain SX

40S ribosomal protein S23