J4_9P7X_017

3D structure

PDB id

9P7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GGAUAG*CAU*AGGGUCC*GUUC

Length

20 nucleotides

Bulged bases

9P7X|1|Zt|U|8, 9P7X|1|Zt|U|47, 9P7X|1|Zt|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9P7X_017 not in the Motif Atlas

Homologous match to J4_6GSK_031

Geometric discrepancy: 0.4519

The information below is about J4_6GSK_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_13620.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

9P7X|1|Zt|G|5
9P7X|1|Zt|G|6
9P7X|1|Zt|A|7
9P7X|1|Zt|U|8
9P7X|1|Zt|A|9
9P7X|1|Zt|G|10
*
9P7X|1|Zt|C|25
9P7X|1|Zt|A|26
9P7X|1|Zt|U|27
*
9P7X|1|Zt|A|43
9P7X|1|Zt|G|44
9P7X|1|Zt|G|45
9P7X|1|Zt|G|46
9P7X|1|Zt|U|47
9P7X|1|Zt|C|48
9P7X|1|Zt|C|49
*
9P7X|1|Zt|G|65
9P7X|1|Zt|U|66
9P7X|1|Zt|U|67
9P7X|1|Zt|C|68

Current chains

Chain Zt

Z site tRNA

Nearby chains