J4_9PA7_009

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|3634
9PA7|1|L5|A|3635
9PA7|1|L5|C|3636
9PA7|1|L5|PSU|3637
9PA7|1|L5|G|3638
*
9PA7|1|L5|C|3650
9PA7|1|L5|A|3651
9PA7|1|L5|A|3652
9PA7|1|L5|A|3653
9PA7|1|L5|G|3654
*
9PA7|1|L5|U|3690
9PA7|1|L5|G|3691
9PA7|1|L5|A|3692
9PA7|1|L5|U|3693
9PA7|1|L5|U|3694
*
9PA7|1|L5|A|3821
9PA7|1|L5|PSU|3822
9PA7|1|L5|G|3823
9PA7|1|L5|A|3824
9PA7|1|L5|A2M|3825
9PA7|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA