J4_9PBE_008

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|G|3634
9PBE|1|L5|A|3635
9PBE|1|L5|C|3636
9PBE|1|L5|PSU|3637
9PBE|1|L5|G|3638
*
9PBE|1|L5|C|3650
9PBE|1|L5|A|3651
9PBE|1|L5|A|3652
9PBE|1|L5|A|3653
9PBE|1|L5|G|3654
*
9PBE|1|L5|U|3690
9PBE|1|L5|G|3691
9PBE|1|L5|A|3692
9PBE|1|L5|U|3693
9PBE|1|L5|U|3694
*
9PBE|1|L5|A|3821
9PBE|1|L5|PSU|3822
9PBE|1|L5|G|3823
9PBE|1|L5|A|3824
9PBE|1|L5|A2M|3825
9PBE|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA