J4_9PIH_001
3D structure
- PDB id
- 9PIH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9PIH|1|A|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PIH_001 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.5865
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9PIH|1|A|G|115
9PIH|1|A|A|116
9PIH|1|A|G|117
9PIH|1|A|U|118
9PIH|1|A|A|119
9PIH|1|A|A|120
9PIH|1|A|U|121
9PIH|1|A|G|122
*
9PIH|1|A|U|239
9PIH|1|A|G|240
*
9PIH|1|A|C|286
9PIH|1|A|U|287
9PIH|1|A|A|288
9PIH|1|A|G|289
*
9PIH|1|A|C|311
9PIH|1|A|C|312
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain Q
- Small ribosomal subunit protein uS17
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