J4_9PIH_002

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9PIH|1|A|C|183, 9PIH|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PIH|1|A|G|142
9PIH|1|A|A|143
9PIH|1|A|G|144
*
9PIH|1|A|C|178
9PIH|1|A|A|179
9PIH|1|A|U|180
9PIH|1|A|A|181
9PIH|1|A|A|182
9PIH|1|A|C|183
9PIH|1|A|G|184
*
9PIH|1|A|C|193
9PIH|1|A|C|194
9PIH|1|A|A|195
9PIH|1|A|A|196
9PIH|1|A|A|197
9PIH|1|A|G|198
*
9PIH|1|A|U|219
9PIH|1|A|G|220
9PIH|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20