J4_9PIH_006

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PIH_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0931

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9PIH|1|a|G|297
9PIH|1|a|G|298
9PIH|1|a|A|299
9PIH|1|a|A|300
9PIH|1|a|G|301
*
9PIH|1|a|C|316
9PIH|1|a|G|317
9PIH|1|a|C|318
9PIH|1|a|G|319
*
9PIH|1|a|C|323
9PIH|1|a|A|324
9PIH|1|a|G|325
*
9PIH|1|a|C|337
9PIH|1|a|G|338
9PIH|1|a|U|339
9PIH|1|a|A|340
9PIH|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24