J4_9PIH_007

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9PIH|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PIH|1|a|C|601
9PIH|1|a|A|602
9PIH|1|a|A|603
9PIH|1|a|G|604
*
9PIH|1|a|C|624
9PIH|1|a|G|625
9PIH|1|a|A|626
9PIH|1|a|A|627
9PIH|1|a|G|628
*
9PIH|1|a|C|635
9PIH|1|a|G|636
9PIH|1|a|A|637
9PIH|1|a|G|638
*
9PIH|1|a|C|650
9PIH|1|a|G|651
9PIH|1|a|U|652
9PIH|1|a|U|653
9PIH|1|a|A|654
9PIH|1|a|A|655
9PIH|1|a|G|656

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15