J4_9PII_001

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9PII|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PII_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5838

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9PII|1|A|G|115
9PII|1|A|A|116
9PII|1|A|G|117
9PII|1|A|U|118
9PII|1|A|A|119
9PII|1|A|A|120
9PII|1|A|U|121
9PII|1|A|G|122
*
9PII|1|A|U|239
9PII|1|A|G|240
*
9PII|1|A|C|286
9PII|1|A|U|287
9PII|1|A|A|288
9PII|1|A|G|289
*
9PII|1|A|C|311
9PII|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17