J4_9PII_002

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9PII|1|A|C|183, 9PII|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PII|1|A|G|142
9PII|1|A|A|143
9PII|1|A|G|144
*
9PII|1|A|C|178
9PII|1|A|A|179
9PII|1|A|U|180
9PII|1|A|A|181
9PII|1|A|A|182
9PII|1|A|C|183
9PII|1|A|G|184
*
9PII|1|A|C|193
9PII|1|A|C|194
9PII|1|A|A|195
9PII|1|A|A|196
9PII|1|A|A|197
9PII|1|A|G|198
*
9PII|1|A|U|219
9PII|1|A|G|220
9PII|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20