J4_9PII_006

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PII_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0918

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9PII|1|a|G|297
9PII|1|a|G|298
9PII|1|a|A|299
9PII|1|a|A|300
9PII|1|a|G|301
*
9PII|1|a|C|316
9PII|1|a|G|317
9PII|1|a|C|318
9PII|1|a|G|319
*
9PII|1|a|C|323
9PII|1|a|A|324
9PII|1|a|G|325
*
9PII|1|a|C|337
9PII|1|a|G|338
9PII|1|a|U|339
9PII|1|a|A|340
9PII|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24