J4_9PII_007

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9PII|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PII|1|a|C|601
9PII|1|a|A|602
9PII|1|a|A|603
9PII|1|a|G|604
*
9PII|1|a|C|624
9PII|1|a|G|625
9PII|1|a|A|626
9PII|1|a|A|627
9PII|1|a|G|628
*
9PII|1|a|C|635
9PII|1|a|G|636
9PII|1|a|A|637
9PII|1|a|G|638
*
9PII|1|a|C|650
9PII|1|a|G|651
9PII|1|a|U|652
9PII|1|a|U|653
9PII|1|a|A|654
9PII|1|a|A|655
9PII|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15