J4_9PIJ_007

3D structure

PDB id

9PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9PIJ|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PIJ|1|a|C|601
9PIJ|1|a|A|602
9PIJ|1|a|A|603
9PIJ|1|a|G|604
*
9PIJ|1|a|C|624
9PIJ|1|a|G|625
9PIJ|1|a|A|626
9PIJ|1|a|A|627
9PIJ|1|a|G|628
*
9PIJ|1|a|C|635
9PIJ|1|a|G|636
9PIJ|1|a|A|637
9PIJ|1|a|G|638
*
9PIJ|1|a|C|650
9PIJ|1|a|G|651
9PIJ|1|a|U|652
9PIJ|1|a|U|653
9PIJ|1|a|A|654
9PIJ|1|a|A|655
9PIJ|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15