J4_9PIJ_010
3D structure
- PDB id
- 9PIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9PIJ|1|a|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PIJ_010 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.2296
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9PIJ|1|a|U|1313
9PIJ|1|a|C|1314
*
9PIJ|1|a|G|1338
9PIJ|1|a|G|1339
9PIJ|1|a|U|1340
9PIJ|1|a|G|1341
9PIJ|1|a|A|1342
9PIJ|1|a|G|1343
*
9PIJ|1|a|C|1404
9PIJ|1|a|U|1405
*
9PIJ|1|a|A|1597
9PIJ|1|a|A|1598
9PIJ|1|a|U|1599
9PIJ|1|a|C|1600
9PIJ|1|a|G|1601
9PIJ|1|a|U|1602
9PIJ|1|a|A|1603
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
Coloring options: