J4_9PJ7_013
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9PJ7|1|a|U|2154
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PJ7|1|a|C|2016
9PJ7|1|a|U|2017
9PJ7|1|a|2MG|2018
*
9PJ7|1|a|C|2088
9PJ7|1|a|G|2089
*
9PJ7|1|a|C|2107
9PJ7|1|a|C|2108
9PJ7|1|a|U|2109
9PJ7|1|a|A|2110
9PJ7|1|a|A|2111
9PJ7|1|a|G|2112
9PJ7|1|a|G|2113
9PJ7|1|a|U|2114
9PJ7|1|a|A|2115
9PJ7|1|a|G|2116
*
9PJ7|1|a|C|2150
9PJ7|1|a|G|2151
9PJ7|1|a|A|2152
9PJ7|1|a|A|2153
9PJ7|1|a|U|2154
9PJ7|1|a|G|2155
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- Transfer RNA; tRNA
- Chain X
- AURKAIP1/COX24 domain-containing protein
- Chain c
- 50S ribosomal protein L2
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