J4_9PJ8_006

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAG*UACC*GUG*UGUAA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9PJ8_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1214

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9PJ8|1|a|U|382
9PJ8|1|a|G|383
9PJ8|1|a|A|384
9PJ8|1|a|A|385
9PJ8|1|a|G|386
*
9PJ8|1|a|U|401
9PJ8|1|a|A|402
9PJ8|1|a|C|403
9PJ8|1|a|C|404
*
9PJ8|1|a|G|408
9PJ8|1|a|U|409
9PJ8|1|a|G|410
*
9PJ8|1|a|U|422
9PJ8|1|a|G|423
9PJ8|1|a|U|424
9PJ8|1|a|A|425
9PJ8|1|a|A|426

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

Large ribosomal subunit protein uL24