J4_9PJ8_007

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUGAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ8|1|a|C|685
9PJ8|1|a|G|686
9PJ8|1|a|A|687
9PJ8|1|a|G|688
*
9PJ8|1|a|C|710
9PJ8|1|a|G|711
9PJ8|1|a|U|712
9PJ8|1|a|A|713
9PJ8|1|a|G|714
*
9PJ8|1|a|C|721
9PJ8|1|a|G|722
9PJ8|1|a|A|723
9PJ8|1|a|G|724
*
9PJ8|1|a|C|736
9PJ8|1|a|G|737
9PJ8|1|a|U|738
9PJ8|1|a|G|739
9PJ8|1|a|A|740
9PJ8|1|a|G|741

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15