J4_9PJ9_007

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUGAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ9|1|a|C|685
9PJ9|1|a|G|686
9PJ9|1|a|A|687
9PJ9|1|a|G|688
*
9PJ9|1|a|C|710
9PJ9|1|a|G|711
9PJ9|1|a|U|712
9PJ9|1|a|A|713
9PJ9|1|a|G|714
*
9PJ9|1|a|C|721
9PJ9|1|a|G|722
9PJ9|1|a|A|723
9PJ9|1|a|G|724
*
9PJ9|1|a|C|736
9PJ9|1|a|G|737
9PJ9|1|a|U|738
9PJ9|1|a|G|739
9PJ9|1|a|A|740
9PJ9|1|a|G|741

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15