J4_9PJ9_008
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGUGUG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 9PJ9|1|a|G|1348, 9PJ9|1|a|U|1349, 9PJ9|1|a|U|1831
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PJ9_008 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.4964
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PJ9|1|a|C|1347
9PJ9|1|a|G|1348
9PJ9|1|a|U|1349
9PJ9|1|a|G|1350
9PJ9|1|a|U|1351
9PJ9|1|a|G|1352
*
9PJ9|1|a|C|1370
9PJ9|1|a|C|1371
*
9PJ9|1|a|G|1829
9PJ9|1|a|A|1830
9PJ9|1|a|U|1831
9PJ9|1|a|C|1832
*
9PJ9|1|a|G|2192
9PJ9|1|a|G|2193
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
Coloring options: