J4_9PJ9_010
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UC*GGUGAG*CC*GCCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 9PJ9|1|a|G|1417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PJ9_010 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.1352
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9PJ9|1|a|U|1389
9PJ9|1|a|C|1390
*
9PJ9|1|a|G|1414
9PJ9|1|a|G|1415
9PJ9|1|a|U|1416
9PJ9|1|a|G|1417
9PJ9|1|a|A|1418
9PJ9|1|a|G|1419
*
9PJ9|1|a|C|1480
9PJ9|1|a|C|1481
*
9PJ9|1|a|G|1781
9PJ9|1|a|C|1782
9PJ9|1|a|C|1783
9PJ9|1|a|C|1784
9PJ9|1|a|G|1785
9PJ9|1|a|U|1786
9PJ9|1|a|A|1787
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
Coloring options: