J4_9PJ9_012
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9PJ9_012 not in the Motif Atlas
- Homologous match to J4_7A0S_008
- Geometric discrepancy: 0.0648
- The information below is about J4_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PJ9|1|a|G|1955
9PJ9|1|a|A|1956
9PJ9|1|a|C|1957
9PJ9|1|a|U|1958
9PJ9|1|a|G|1959
*
9PJ9|1|a|C|1971
9PJ9|1|a|A|1972
9PJ9|1|a|C|1973
9PJ9|1|a|A|1974
9PJ9|1|a|G|1975
*
9PJ9|1|a|U|2010
9PJ9|1|a|G|2011
9PJ9|1|a|A|2012
9PJ9|1|a|C|2013
*
9PJ9|1|a|G|2158
9PJ9|1|a|U|2159
9PJ9|1|a|A|2160
9PJ9|1|a|A|2161
9PJ9|1|a|C|2162
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain X
- AURKAIP1/COX24 domain-containing protein
- Chain c
- 50S ribosomal protein L2
Coloring options: