J4_9PKD_008
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|G|3634
9PKD|1|L5|A|3635
9PKD|1|L5|C|3636
9PKD|1|L5|PSU|3637
9PKD|1|L5|G|3638
*
9PKD|1|L5|C|3650
9PKD|1|L5|A|3651
9PKD|1|L5|A|3652
9PKD|1|L5|A|3653
9PKD|1|L5|G|3654
*
9PKD|1|L5|U|3690
9PKD|1|L5|G|3691
9PKD|1|L5|A|3692
9PKD|1|L5|U|3693
9PKD|1|L5|U|3694
*
9PKD|1|L5|A|3821
9PKD|1|L5|PSU|3822
9PKD|1|L5|G|3823
9PKD|1|L5|A|3824
9PKD|1|L5|A2M|3825
9PKD|1|L5|C|3826
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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