J4_9PKD_009
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 9PKD|1|L5|UY1|3818
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|3696
9PKD|1|L5|U|3697
9PKD|1|L5|G|3698
*
9PKD|1|L5|C|3752
9PKD|1|L5|G|3753
*
9PKD|1|L5|C|3771
9PKD|1|L5|U|3772
9PKD|1|L5|U|3773
9PKD|1|L5|A|3774
9PKD|1|L5|A|3775
9PKD|1|L5|G|3776
9PKD|1|L5|G|3777
9PKD|1|L5|U|3778
9PKD|1|L5|A|3779
9PKD|1|L5|G|3780
*
9PKD|1|L5|U|3814
9PKD|1|L5|G|3815
9PKD|1|L5|A|3816
9PKD|1|L5|A|3817
9PKD|1|L5|UY1|3818
9PKD|1|L5|G|3819
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: