J4_9PKD_014
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9PKD|1|S2|A|1083, 9PKD|1|S2|C|1085, 9PKD|1|S2|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|A|671
9PKD|1|S2|A|672
9PKD|1|S2|G|673
*
9PKD|1|S2|C|1032
9PKD|1|S2|G|1033
9PKD|1|S2|A|1034
9PKD|1|S2|A|1035
9PKD|1|S2|A|1036
9PKD|1|S2|G|1037
*
9PKD|1|S2|C|1078
9PKD|1|S2|C|1079
9PKD|1|S2|A|1080
9PKD|1|S2|PSU|1081
9PKD|1|S2|A|1082
9PKD|1|S2|A|1083
9PKD|1|S2|A|1084
9PKD|1|S2|C|1085
9PKD|1|S2|G|1086
9PKD|1|S2|A|1087
9PKD|1|S2|U|1088
9PKD|1|S2|G|1089
*
9PKD|1|S2|U|1160
9PKD|1|S2|U|1161
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- Small ribosomal subunit protein uS11
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
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