J4_9PKG_003

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9PKG|1|L5|G|1271, 9PKG|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|C|981
9PKG|1|L5|U|982
9PKG|1|L5|C|983
*
9PKG|1|L5|G|1070
9PKG|1|L5|C|1071
9PKG|1|L5|C|1072
*
9PKG|1|L5|G|1240
9PKG|1|L5|C|1241
9PKG|1|L5|G|1242
9PKG|1|L5|C|1243
*
9PKG|1|L5|G|1268
9PKG|1|L5|G|1269
9PKG|1|L5|A|1270
9PKG|1|L5|G|1271
9PKG|1|L5|C|1272
9PKG|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Lb

Large ribosomal subunit protein eL29