J4_9PN5_002

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_05458.1

Basepair signature

cWW-cWW-cHH-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9PN5|1|A1|C|185
9PN5|1|A1|U|186
9PN5|1|A1|A|187
9PN5|1|A1|U|188
9PN5|1|A1|G|189
*
9PN5|1|A1|C|205
9PN5|1|A1|G|206
9PN5|1|A1|U|207
9PN5|1|A1|C|208
*
9PN5|1|A1|G|212
9PN5|1|A1|A|213
9PN5|1|A1|G|214
*
9PN5|1|A1|C|226
9PN5|1|A1|G|227
9PN5|1|A1|U|228
9PN5|1|A1|G|229
9PN5|1|A1|U|230
9PN5|1|A1|G|231

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A