Motif J4_05458.1 Version J4_05458.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 1-18 | 2-17 | 3-9 | 3-14 | 4-8 | 5-6 | 9-10 | 11-14 | 12-13 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8OI5_002 | 8OI5 | 0.0000 | 0 | 1 | LSU rRNA | C | 184 | U | 185 | A | 186 | U | 187 | G | 188 | * | C | 204 | G | 205 | U | 206 | C | 207 | * | G | 211 | A | 212 | G | 213 | * | C | 225 | G | 226 | U | 227 | G | 228 | C | 229 | G | 230 | cWW | ncWW | ncsS | cHH | cSs | cWW | cWW | tHS | cWW |
| 2 | J4_9PN5_002 | 9PN5 | 0.1348 | 0 | A1 | LSU rRNA | C | 185 | U | 186 | A | 187 | U | 188 | G | 189 | * | C | 205 | G | 206 | U | 207 | C | 208 | * | G | 212 | A | 213 | G | 214 | * | C | 226 | G | 227 | U | 228 | G | 229 | U | 230 | G | 231 | cWW | cwW | ncsS | cHH | cSs | cWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAUG*CGUC*GAG*CGUGCG | 1 |
| CUAUG*CGUC*GAG*CGUGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*GU*A*GUGC | 1 |
| UAU*GU*A*GUGU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cHH-F-cSS-F-cWW-tHS-cWW-F-cWW
- Heat map statistics
- Min 0.13 | Avg 0.07 | Max 0.13
Coloring options: