J4_9PN5_003

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

9PN5|1|A1|A|1452, 9PN5|1|A1|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.1

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

9PN5|1|A1|C|1451
9PN5|1|A1|A|1452
9PN5|1|A1|A|1453
9PN5|1|A1|A|1454
9PN5|1|A1|U|1455
9PN5|1|A1|A|1456
9PN5|1|A1|U|1457
*
9PN5|1|A1|A|1475
9PN5|1|A1|G|1476
*
9PN5|1|A1|U|1877
9PN5|1|A1|G|1878
9PN5|1|A1|A|1879
9PN5|1|A1|U|1880
*
9PN5|1|A1|A|2352
9PN5|1|A1|G|2353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Ad

60S ribosomal protein L31-A