J4_9PN5_004
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9PN5|1|A1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9PN5|1|A1|G|1492
9PN5|1|A1|G|1493
9PN5|1|A1|U|1494
9PN5|1|A1|U|1495
9PN5|1|A1|C|1496
*
9PN5|1|A1|G|1520
9PN5|1|A1|G|1521
9PN5|1|A1|U|1522
9PN5|1|A1|U|1523
9PN5|1|A1|A|1524
9PN5|1|A1|G|1525
*
9PN5|1|A1|C|1614
9PN5|1|A1|C|1615
*
9PN5|1|A1|G|1829
9PN5|1|A1|G|1830
9PN5|1|A1|U|1831
9PN5|1|A1|C|1832
9PN5|1|A1|G|1833
9PN5|1|A1|U|1834
9PN5|1|A1|A|1835
9PN5|1|A1|C|1836
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- 60S ribosomal protein L19-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Ak
- 60S ribosomal protein L38
- Chain Al
- 60S ribosomal protein L39
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