Motif J4_17758.2 Version J4_17758.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 4-19 | 5-6 | 9-18 | 10-11 | 12-13 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8OI5_004 | 8OI5 | 0.0565 | 1 | 1 | LSU rRNA | G | 1488 | G | 1489 | U | 1490 | U | 1491 | C | 1492 | * | G | 1516 | G | 1517 | U | 1518 | A | 1520 | G | 1521 | * | C | 1610 | U | 1611 | * | A | 1825 | G | 1826 | U | 1827 | C | 1828 | G | 1829 | U | 1830 | A | 1831 | C | 1832 | cWW | cHW | cWW | tHW | cWW | cWW |
| 2 | J4_9PN5_004 | 9PN5 | 0.0000 | 1 | A1 | LSU rRNA | G | 1492 | G | 1493 | U | 1494 | U | 1495 | C | 1496 | * | G | 1520 | G | 1521 | U | 1522 | A | 1524 | G | 1525 | * | C | 1614 | C | 1615 | * | G | 1829 | G | 1830 | U | 1831 | C | 1832 | G | 1833 | U | 1834 | A | 1835 | C | 1836 | cWW | cHW | cWW | tHW | cWW | cWW |
| 3 | J4_9SUM_004 | 9SUM | 0.0442 | 1 | A | LSU rRNA | G | 1435 | G | 1436 | U | 1437 | U | 1438 | C | 1439 | * | G | 1463 | G | 1464 | U | 1465 | A | 1467 | G | 1468 | * | C | 1556 | U | 1557 | * | A | 1771 | G | 1772 | U | 1773 | C | 1774 | G | 1775 | U | 1776 | A | 1777 | C | 1778 | cWW | cHW | cWW | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GGUUAG*CU*AGUCGUAC | 1 |
| GGUUC*GGUUAG*CC*GGUCGUAC | 1 |
| GGUUC*GGUGAG*CU*AGUCGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*GUUA**GUCGUA | 2 |
| GUU*GUGA**GUCGUA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.04 | Avg 0.04 | Max 0.06
Coloring options: