J4_9PN5_008
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9PN5|1|A1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.3
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PN5|1|A1|C|2654
9PN5|1|A1|U|2655
9PN5|1|A1|A|2656
9PN5|1|A1|A|2657
9PN5|1|A1|G|2658
*
9PN5|1|A1|U|2712
9PN5|1|A1|U|2713
9PN5|1|A1|G|2714
9PN5|1|A1|A|2715
9PN5|1|A1|U|2716
*
9PN5|1|A1|A|2740
9PN5|1|A1|C|2741
9PN5|1|A1|C|2742
*
9PN5|1|A1|G|2751
9PN5|1|A1|U|2752
9PN5|1|A1|G|2753
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- 60S ribosomal protein L5
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ao
- Large ribosomal subunit protein eL42A
Coloring options: