J4_9Q1Q_008
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9Q1Q|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|C|3696
9Q1Q|1|5|U|3697
9Q1Q|1|5|G|3698
*
9Q1Q|1|5|C|3752
9Q1Q|1|5|G|3753
*
9Q1Q|1|5|C|3771
9Q1Q|1|5|U|3772
9Q1Q|1|5|U|3773
9Q1Q|1|5|A|3774
9Q1Q|1|5|A|3775
9Q1Q|1|5|G|3776
9Q1Q|1|5|G|3777
9Q1Q|1|5|U|3778
9Q1Q|1|5|A|3779
9Q1Q|1|5|G|3780
*
9Q1Q|1|5|U|3814
9Q1Q|1|5|G|3815
9Q1Q|1|5|A|3816
9Q1Q|1|5|A|3817
9Q1Q|1|5|U|3818
9Q1Q|1|5|G|3819
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L8
- Chain n
- eL41
Coloring options: