J4_9Q1S_004
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 9Q1S|1|5|A|2366, 9Q1S|1|5|U|2369, 9Q1S|1|5|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q1S_004 not in the Motif Atlas
- Homologous match to J4_8GLP_004
- Geometric discrepancy: 0.1076
- The information below is about J4_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|C|2365
9Q1S|1|5|A|2366
9Q1S|1|5|A|2367
9Q1S|1|5|A|2368
9Q1S|1|5|U|2369
9Q1S|1|5|A|2370
9Q1S|1|5|U|2371
*
9Q1S|1|5|A|2389
9Q1S|1|5|G|2390
9Q1S|1|5|G|2391
*
9Q1S|1|5|C|2824
9Q1S|1|5|A|2825
9Q1S|1|5|U|2826
9Q1S|1|5|G|2827
9Q1S|1|5|U|2828
9Q1S|1|5|U|2829
*
9Q1S|1|5|A|3856
9Q1S|1|5|G|3857
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain P
- 60S ribosomal protein L17
- Chain R
- 60S ribosomal protein L19
- Chain d
- 60S ribosomal protein L31
Coloring options: