J4_9Q1S_008
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Q1S_008 not in the Motif Atlas
- Homologous match to J4_9PN5_006
- Geometric discrepancy: 0.1143
- The information below is about J4_9PN5_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.4
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q1S|1|5|G|3634
9Q1S|1|5|A|3635
9Q1S|1|5|C|3636
9Q1S|1|5|U|3637
9Q1S|1|5|G|3638
*
9Q1S|1|5|C|3650
9Q1S|1|5|A|3651
9Q1S|1|5|A|3652
9Q1S|1|5|A|3653
9Q1S|1|5|G|3654
*
9Q1S|1|5|U|3690
9Q1S|1|5|G|3691
9Q1S|1|5|A|3692
9Q1S|1|5|U|3693
9Q1S|1|5|U|3694
*
9Q1S|1|5|A|3821
9Q1S|1|5|U|3822
9Q1S|1|5|G|3823
9Q1S|1|5|A|3824
9Q1S|1|5|A|3825
9Q1S|1|5|C|3826
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- 60S ribosomal protein L8
- Chain n
- eL41
- Chain p
- 60S ribosomal protein L37a
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