J4_9Q1S_012

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9Q1S|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|C|98
9Q1S|1|9|A|99
9Q1S|1|9|U|100
9Q1S|1|9|U|101
9Q1S|1|9|A|102
9Q1S|1|9|A|103
9Q1S|1|9|A|104
9Q1S|1|9|U|105
9Q1S|1|9|C|106
*
9Q1S|1|9|G|355
9Q1S|1|9|C|356
9Q1S|1|9|C|357
*
9Q1S|1|9|G|405
9Q1S|1|9|U|406
9Q1S|1|9|G|407
9Q1S|1|9|A|408
9Q1S|1|9|C|409
*
9Q1S|1|9|G|431
9Q1S|1|9|G|432

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

40S ribosomal protein S8

Chain LL

Small ribosomal subunit protein uS17

Chain XX

40S ribosomal protein S23