J4_9Q1S_013
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9Q1S|1|9|A|672, 9Q1S|1|9|A|1083, 9Q1S|1|9|C|1085, 9Q1S|1|9|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|9|A|671
9Q1S|1|9|A|672
9Q1S|1|9|G|673
*
9Q1S|1|9|C|1032
9Q1S|1|9|G|1033
9Q1S|1|9|A|1034
9Q1S|1|9|A|1035
9Q1S|1|9|A|1036
9Q1S|1|9|G|1037
*
9Q1S|1|9|C|1078
9Q1S|1|9|C|1079
9Q1S|1|9|A|1080
9Q1S|1|9|U|1081
9Q1S|1|9|A|1082
9Q1S|1|9|A|1083
9Q1S|1|9|A|1084
9Q1S|1|9|C|1085
9Q1S|1|9|G|1086
9Q1S|1|9|A|1087
9Q1S|1|9|U|1088
9Q1S|1|9|G|1089
*
9Q1S|1|9|U|1160
9Q1S|1|9|U|1161
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Small ribosomal subunit protein uS17
- Chain NN
- 40S ribosomal protein S13
- Chain OO
- Small ribosomal subunit protein uS11
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
- Chain aa
- eS26
- Chain n
- eL41
- Chain p
- 60S ribosomal protein L37a
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